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Fig. 4. The Grunge protein. (A) The predicted amino acid sequence of Grunge protein. The blue box highlights a domain similar to that found in human arginine-glutamic acid dipeptide repeat (RERE) protein (Seki et al., 1997 ; Yanagisawa et al., 2000 ) (63% identity, 66% similarity), human Mta1 (25% identity, 33% similarity), Drosophila Mta-1 (27% identity, 36% similarity) and EGL-27 (29% identity, 35% similarity) (see Fig. 4C). The green box corresponds to a domain with weak similarity to human RERE (20% identity, 41% similarity), human Atrophin-related (20% identity, 40% similarity) and mouse atrophin 1 (23% identity, 44% similarity). The purple box is a domain of weak homology found in mouse atrophin 1 (30% identity, 45% similarity) and rat atrophin 1 related (22% identity; 30% similarity). Finally, the orange box shows homology to human RERE (40% identity, 44% similarity), human atrophin-related (28% identity, 45% similarity) and human atrophin 1 (30% identity, 45% similarity; see Fig. 4D). The location of the two poly-glutamine (Q) stretches is indicated in grey and three putative nuclear localisation signal motifs are indicated in yellow. A putative Caspase protease site is present (IEPD, red letters). (B-D) Conserved domains in the Gug protein. Comparison of the structure of Gug and the human arginine-glutamic acid dipeptide repeat (RERE) (Seki et al., 1997 ; Yanagisawa et al., 2000 ), Atrophin-1-like, protein. Colour codes are as in A. The black box indicates a GATA-like domain and the yellow box to a brahma adjacent homology (BAH) domain present in RERE but not in Gug. The purple box is a weak domain of homology found in mouse and human atrophin 1 but not human RERE. (C) Alignment of the amino acids from the N-terminal domain of Gug compared with Drosophila Metastasis-associated factor (MTA1), the C. elegans EGL-27 protein and the human RERE, Atrophin-1-like, protein. This domain contains an ELM2 region (dark-blue outline) and a SANT DNA-binding domain (light blue outline) (Solari et al., 1999 ). (D) Sequence comparison of the C-terminal domains of Gug and the human RERE protein. This region has comparable levels of similarity to vertebrate DRPLA proteins (not shown). Identities are indicated by white letters on black, similarities are indicated by black letters on grey.
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