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Fig. 3. Identification of Pax6 binding sites in Ngn2 enhancers. (A)
Schematic representation of the Ngn2 locus showing the position of
the E1 and E3 enhancers, the organization of the E1 enhancer, and the position
of the E1.1 and E3.2 Pax6 binding sites, showing high similarity with a
consensus binding sequence. The blue box represents a block of sequence in the
E1 element showing high similarity (94%) between the murine and human
Ngn2 genes. The top sequences are the published consensus Pax6
binding site (Epstein et al.,
1994 ; Czerny and Busslinger,
1995 ), the middle sequences are the Pax6 binding sites found in
the human gene and the bottom sequences are the the same sites in the mouse
gene. Red letters indicate conserved nucleotides between sequences in the
Ngn2 enhancers and the consensus binding sequence, and black letters
indicate mismatches. (B, left panel) Electromobility shift assay performed
with recombinant Pax6 protein and oligonucleotides containing the E1.1 and
E3.2 sequences, the consensus Pax6 binding site as a positive control (cons),
a mutated version of E1.1 as a negative control (mtE1.1), and an optimized
version of E1.1 (consE1.1). Oligonucleotides corresponding to the sequences
surrounding and including the E1.1 and E3.2 binding sites form a complex with
Pax6 protein, but twice the amount of Pax6 protein was required to form a
complex with E1.1 as compared to E3.2 or the consensus sequence. The smaller
amount of complex formed with the E1.1-containing oligonucleotide suggests
that the E1.1 sequence has a low affinity for Pax6. (B, right panel) The
interaction of Pax6 and E1.1 is disrupted by incubation with an antibody to
Pax6 but not to Pax2. Also Pax3 and Pax8 recombinant proteins do not form
complexes with E1.1. The interaction of Pax6 with E1.1 is therefore specific.
(C) Double labelling for ß-gal (red, left panels) and GFP (green, right
panels) on chick neural tubes 6 hours after electroporation with the
constructs 4xE1.1-ßglobinlacZ (a,b,e,f),
4xE3.2-ßglobinlacZ (c,d,g,h) and
CMVPax6 (e-h). A CMVGFP vector was co-electroporated to
control for transfection efficiency (b,d,f,h). The E3.2 concatemer efficiently
drives ß-gal expression in the early neural tube (c), where endogenous
levels of Pax6 protein are low (see Fig.
1), while the E1.1 concatemer does not (a). Activity of the E1.1
concatemer is significantly enhanced in the presence of exogenous Pax6 protein
(e), while activity of the E3.2 concatemer is not further increased. Dashed
lines outline the neural tube.
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