Pdd1p associates with germline-restricted chromatin and a second novel anlagen-enriched protein in developmentally programmed DNA elimination structures

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Abraham, J., Nasmyth, K. A., Strathern, J. N., Klar, A. J. S. and Hicks, J. B (1984). Regulation of mating type information in yeast. Negative controlrequiring sequences both 5and 3 to the regulated regions. J. Mol. Biol 176, 307-331.[Medline]

Allis, C. D. and Dennison, D. K (1982). Identification and purification of young macronuclear anlagen from conjugating cells of Tetrahymena thermophila. Dev. Biol 93, 519-533.[Medline]

Baroich, A (1992). PROSITE: a dictionary of sites and patterns in proteins. Nuc. Acids Res 20, 2013-2018.

Bassnett, S. and Mataic, D (1997). Chromatin degradation in differentiating fiber cells of the eye lens. J. Cell Biol 137, 37-49.[Abstract/Free Full Text]

Beams, H. W. and Kessel, R. G (1974). The problem of germ cell determinants. Inter. Rev. Cytol 39, 413-479.[Medline]

Borst, P. and Greaves, P. R (1987). Programmed gene rearrangements altering gene expression. Science 235, 658-667.[Abstract/Free Full Text]

Braunstein, M., Rose, A. B., Holmes, S. G., Allis, C. D. and Broach, J. R (1993). Transcriptional silencing in yeast is associated with reduced nucleosome acetylation. Genes Dev 7, 592-604.[Abstract/Free Full Text]

Braunstein, M., Sobel, R. E., Allis, C. D., Turner, B. M. and Broach J. R (1996). Efficient transcriptional silencing in Saccharomyces cerevisiae requires a heterochromatin histone acetylation pattern. Mol. Cell. Biol 16, 4349-4356.[Abstract]

Callebaut, I., Courvalin, J. C., Worman, H. J. and Mornon, J. P (1997). Hydrophobic cluster analysis reveals a third chromodomain in the Tetrahymena Pdd1p protein of the chromo superfamily. Biochem. Biophys. Res. Commun 235, 103-107.[Medline]

Coyne, R. S., Chalker, D. L. and Yao, M.-C (1996). Genome downsizing during ciliate development: nuclear division of labor through chromosome restructuring. Annu. Rev. Genet 30, 557-578.[Medline]

Cross, G. A. M (1996). Antigenic variation in trypanosomes: secrets surface slowly. BioEssays 18, 283-291.[Medline]

Davis M. C., Ward, J. G., Herrick, G. and Allis, C. D (1992). Programmed nuclear death: Apoptotic-like degradation of specific nuclei in conjugating Tetrahymena. Dev. Biol 154, 419-432.[Medline]

Dedon, P. C., Soults, J. A., Allis, C. D. and Gorovsky, M. A (1991). Formaldehyde cross-linking and immunoprecipitation demonstrate developmental changes in H1 association with transcriptionally active genes. Mol. Cell. Biol 11, 1729-1733.[Abstract/Free Full Text]

de Saint Phalle, B. and Sullivan, W (1996). Incomplete sister chromatid separation is the mechanism of programmed chromosome elimination during early Sciara coprophila embryogenesis. Development 122, 3775-3784.[Abstract]

Eissenberg, J. C., Ge, Y.-W. and Hartnett, T (1994). Increased phosphorylation of HP1, a heterochromatin-associated protein of Drosophila , is correlated with heterochromatin assembly. J. Biol. Chem 269, 21315-21321.[Abstract/Free Full Text]

Frohman, M. A (1993). Rapid amplification of complementary DNA ends for generation of full-length complementary DNAs: thermal RACE. Meth. Enzymol 218, 340-356.[Medline]

Gaertig, J. A., Thatcher, T. H., McGrath, K. E., Callahan, R. and Gorovsky, M. A (1993). Perspectives on tubulin isotype function and evolution based on the observation that Tetrahymena thermophila microtubules contain a single alpha-and beta-tubulin. Cell Motil. Cytoskeleton 25, 243-253.[Medline]

Gavrieli, Y., Sherman, Y. and Ben-Sasson, S. A (1992). Identification of programmed cell death in situ via specific labeling of nuclear DNA fragmentation. J. Cell Biol 119, 493-501.[Abstract/Free Full Text]

Gorovsky, M. A., Yao, M.-C., Keevert, J. B. and Pleger, G. L (1975). Isolation of micronuclei and macronuclei of Tetrahymena pyriformis. Methods Cell Biol 19, 311-327.

Greider, C. W. and Blackburn, E. H (1989). A telomeric sequence in the RNA of Tetrahymena telomerase is required for telomeric repeat synthesis. Nature 337, 331-337.[Medline]

Jahn, C. L., Ling, Z., Tebeau, C. M. and Klobutcher, L. A (1997). An unusual histone H3 specific for early macronuclear development in Euplotes crassus. Proc. Natl. Acad. Sci. USA 94, 1332-1337.[Abstract/Free Full Text]

Klar, A. J (1993). Lineage-dependent mating-type transposition in fission and budding yeast. Curr. Opin. Genet. Dev 3, 745-751.[Medline]

Kubota, S., Kuro-o, M., Miwuno, S. and Kohno, S-i (1993). Germ-line restricted, highly repeated DNA sequences and their chromosomal localization in a Japanese hagfish ( Eptatretus okinoseanus ). Chromosoma 102, 163-173.[Medline]

Lieber, M. R (1992). The mechanism of V(D)J recombination: a balance of diversity, specificity, and stability. Cell 70, 873-876.[Medline]

Madireddi, M. T., Davis, M. C. and Allis, C. D (1994). Identification of a novel polypeptide involved in the formation of DNA-containing vesicles during macronuclear development in Tetrahymena. Dev. Biol 165, 418-431.[Medline]

Madireddi, M. T., Coyne, R. S., Smothers, J. F., Mickey, K. M., Yao, M.-C. and Allis, C. D (1996). Pdd1p, a novel chromodomain-containing protein, links heterochromatin assembly and DNA elimination in Tetrahymena. Cell 87, 75-84.[Medline]

Martindale, D. W (1989). Codon usage in Tetrahymena and other ciliates. J. Protozool 36, 29-34.[Medline]

Martindale, D. W., Allis, C. D. and Bruns, P. J (1982). Conjugation in Tetrahymena thermophila (a temporal analysis of cytological stages). Exp. Cell Res 140, 227-236.[Medline]

Maruyama, I. N., Rakow, T. L. and Maruyama, H. I (1995). cRACE: a simple methjod for identification of the 5end of mRNAs. Nucleic Acids Res 23, 3796-3797.[Free Full Text]

McGrath, K. E., Smothers, J. F., Dadd, C. A., Madireddi, M. T., Gorovsky, M. A. and Allis, C. D (1997). An abundant nucleolar phosphoprotein is associated with ribosomal DNA in Tetrahymena macronuclei. Mol. Biol. Cell 8, 97-108.[Abstract]

McLean, I. W. and Nakane, P. K (1974). Periodate-lysine-paraformaldehyde fixative: a new fixative for immunoelectron microscopy. J. Histochem. Cytochem 22, 1077-1083.[Abstract]

Mpoke, S. and Wolfe, J (1996). DNA digestion and chromatin condensation during nuclear death in Tetrahymena. Exp. Cell Res 225, 357-365.[Medline]

Nakai, Y., Kubota, S., Goto, Y., Ishibashi, T., Davison, W. and Kohno, S (1995). Chromosome elimination in three Baltic, south Pacific and north-east Pacific hagfish species. Chrom. Res 3, 321-330.[Medline]

Nakai, Y., Kubota, S. and Kohno, S (1991). Chromatin diminution and chromosome elimination in four Japanese hagfish species. Cytogen. Cell Genet 56, 196-198.[Medline]

Olmsted J. B (1981). Affinity purification of antibodies from diazotized paper blots of heterogeneous protein samples. J. Biol. Chem 256, 11955-11957.[Abstract/Free Full Text]

Paro, R. and Hogness, D. S (1991). The polycomb protein shares a homologous domain with a heterochromatin-associated protein of Drosophila. Proc. Natl. Acad. Sci. USA 88, 263-267.[Abstract/Free Full Text]

Prescott, D. M (1994). The DNA of ciliated protozoa. Microbiol. Rev 58, 233-267.[Abstract/Free Full Text]

Spradling, A. C. and Mahowald, A. P (1980). Amplification of genes for chorion proteins during oogenesis in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 17, 1096-1100.

Stanley, H. P., Kasinsky, H. E. and Bols, N. C (1984). Meiotic chromatin diminution in a vertebrate, the holocephalan fish Hydrologus colliei (Chondrichthyes, Holocephali). Tissue Cell 16, 203-215.[Medline]

Turner B. M., Birley A. J. and Lavender, J (1992). Histone H4 isoforms acetylated at specific lysine residues define individual chromosomes and chromatin domains in Drosophila polytene nuclei. Cell 69, 375-384.[Medline]

Wenkert, D. and Allis, C. D (1984). Timing of the appearance of macronuclear-specific histone variant hv1 and gene expression in developing new macronuclei of Tetrahymena thermophila. J. Cell. Biol 98, 2107-2117.[Abstract/Free Full Text]

Yao, M.-C (1982). Elimination of specific DNA sequences from the somatic nucleus of the ciliate Tetrahymena. J. Cell Biol 92, 783-789.[Abstract/Free Full Text]

Yao, M.-C (1996). Programmed DNA deletions in Tetrahymena : mechanisms and implications. Trends in Genet 12, 26-30.[Medline]

Yao, M.-C., Choi, J., Yokoyama, S., Austerberry, C. F. and Yao, C. H (1984). DNA elimination in Tetrahymena : A developmental process involving extensive breakage and rejoining of DNA at defined sites. Cell 36, 433-440.[Medline]

Yao, M.-C. and Gall, J. G (1979). Alteration of the Tetrahymena genome during nuclear differentiation. J. Protozool 26, 10-13.

Yao, M.-C. and Gorovsky, M. A (1974). Comparison of the sequences of macro-and micronuclear DNA of Tetrahymena pyriformis. Chromosoma 48, 1-18.[Medline]

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Articles by Smothers, J. F.

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				Y. Liu, S. D. Taverna, T. L. Muratore, J. Shabanowitz, D. F. Hunt, and C. D. Allis RNAi-dependent H3K27 methylation is required for heterochromatin formation and DNA elimination in Tetrahymena Genes & Dev., June 15, 2007; 21(12): 1530 - 1545. [Abstract] [Full Text] [PDF]

				M.-C. Yao, C.-H. Yao, L. M. Halasz, P. Fuller, C. H. Rexer, S. H. Wang, R. Jain, R. S. Coyne, and D. L. Chalker Identification of novel chromatin-associated proteins involved in programmed genome rearrangements in Tetrahymena J. Cell Sci., June 15, 2007; 120(12): 1978 - 1989. [Abstract] [Full Text] [PDF]

				B. Cui and M. A. Gorovsky Centromeric Histone H3 Is Essential for Vegetative Cell Division and for DNA Elimination during Conjugation in Tetrahymena thermophila Mol. Cell. Biol., June 15, 2006; 26(12): 4499 - 4510. [Abstract] [Full Text] [PDF]

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				K. Mochizuki and M. A. Gorovsky A Dicer-like protein in Tetrahymena has distinct functions in genome rearrangement, chromosome segregation, and meiotic prophase Genes & Dev., January 1, 2005; 19(1): 77 - 89. [Abstract] [Full Text] [PDF]

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				S. Duharcourt and M.-C. Yao Role of Histone Deacetylation in Developmentally Programmed DNA Rearrangements in Tetrahymena thermophila Eukaryot. Cell, April 1, 2002; 1(2): 293 - 303. [Abstract] [Full Text] [PDF]

				D. L. Chalker and M.-C. Yao Nongenic, bidirectional transcription precedes and may promote developmental DNA deletion in Tetrahymena thermophila Genes & Dev., May 15, 2001; 15(10): 1287 - 1298. [Abstract] [Full Text]

				J. A. Gershan and K. M. Karrer A family of developmentally excised DNA elements in Tetrahymena is under selective pressure to maintain an open reading frame encoding an integrase-like protein Nucleic Acids Res., November 1, 2000; 28(21): 4105 - 4112. [Abstract] [Full Text] [PDF]

				M. A. Nikiforov, M. A. Gorovsky, and C. D. Allis A Novel Chromodomain Protein, Pdd3p, Associates with Internal Eliminated Sequences during Macronuclear Development in Tetrahymena thermophila Mol. Cell. Biol., June 1, 2000; 20(11): 4128 - 4134. [Abstract] [Full Text]

				M. A. Nikiforov, J. F. Smothers, M. A. Gorovsky, and C. D. Allis Excision of micronuclear-specific DNA requires parental expression of Pdd2p andoccursindependentlyfromDNA replication in Tetrahymena thermophila Genes & Dev., November 1, 1999; 13(21): 2852 - 2862. [Abstract] [Full Text]

				C. Maercker, H. Kortwig, M. A. Nikiforov, C. D. Allis, and H. J. Lipps A Nuclear Protein Involved in Apoptotic-like DNA Degradation in Stylonychia: Implications for Similar Mechanisms in Differentiating and Starved Cells Mol. Biol. Cell, September 1, 1999; 10(9): 3003 - 3014. [Abstract] [Full Text]

				C Janetopoulos, E Cole, J. Smothers, C. Allis, and K. Aufderheide The conjusome: a novel structure in Tetrahymena found only during sexual reorganization J. Cell Sci., January 4, 1999; 112(7): 1003 - 1011. [Abstract] [PDF]